Some (not all) publications that used our software
Diabetes Res Clin Pract. 2013 Sep;101(3):341-8. doi: 10.1016/j.diabres.2013.07.002. Epub 2013 Jul 19. Association between low SIRT1 expression in visceral and subcutaneous adipose tissues and metabolic abnormalities in women with obesity and type 2 diabetes. Song YS1, Lee SK, Jang YJ, Park HS, Kim JH, Lee YJ, Heo YS. AAD Vol.4 No.4, December 2015 IL-1ß, TNF-a and Sambucus nigra Reactive Serum Proteins as Biomarkers of Mild Cognitive Impairment and Alzheimer Disease Progression Luis Manuel Castillo1, Enrique Moreno1, Yaneth Rodríguez-Agudelo2, Mireya Chávez-Oliveros2, Zoila Trujillo3, Blanca Espinosa4, Emma Rodriguez-Maldonado5, Luis Felipe Montaño6, Jorge Guevara1 Electrophoresis. 2015 May;36(9-10):1224-7. doi: 10.1002/elps.201500094. Epub 2015 May 5. Fast reversible single-step method for enhanced band contrast of polyacrylamide gels for automated detection. Ling WL1, Lua WH1, Gan SK1,2. Int J Biol Macromol. 2015 Aug;79:903-12. doi: 10.1016/j.ijbiomac.2015.05.042. Epub 2015 Jun 10. Structural and functional studies of Hsp70-escort protein--Hep1--of Leishmania braziliensis. Dores-Silva PR1, Beloti LL1, Minari K2, Silva SM1, Barbosa LR3, Borges JC4. Int J Mol Med. 2014 Feb;33(2):415-22. doi: 10.3892/ijmm.2013.1574. Epub 2013 Dec 4. A novel retinoic acid analog, 4-amino-2-trifluoromethyl-phenyl retinate, inhibits gastric cancer cell growth. Hu KW1, Pan XH2, Chen FH3, Qin R4, Wu LM5, Zhu HG1, Wu FR3, Ge JF3, Han WX1, Yin CL1, Li HJ1. Genet Mol Res. 2014 Mar 12;13(1):1579-88. doi: 10.4238/2014.March.12.10. Phosphate-induced-1 gene from Eucalyptus (EgPHI-1) enhances osmotic stress tolerance in transgenic tobacco. Sousa AO1, Assis ET1, Pirovani CP1, Alvim FC1, Costa MG2. Proc Natl Acad Sci U S A. 2015 Dec 29;112(52):15916-21. doi: 10.1073/pnas.1513034112. Epub 2015 Dec 14. Human RNase L tunes gene expression by selectively destabilizing the microRNA-regulated transcriptome. Rath S1, Donovan J1, Whitney G1, Chitrakar A1, Wang W2, Korennykh A3. Fitoterapia. 2015 Jun;103:55-62. doi: 10.1016/j.fitote.2015.03.013. Epub 2015 Mar 20. HIF-prolyl hydroxylase is a potential molecular target for esculetin-mediated anti-colitic effects. Yum S1, Jeong S1, Lee S1, Kim W1, Nam J1, Jung Y2. BMC Res Notes. 2015 Dec 26;8(1):821. doi: 10.1186/s13104-015-1753-0. Phytochemical investigation of crude methanol extracts of different species of Swertia from Nepal. Khanal S1, Shakya N2, Thapa K3, Pant DR4,5. Diabetes. 2014 May;63(5):1546-59. doi: 10.2337/db13-1364. MicroRNA-149 inhibits PARP-2 and promotes mitochondrial biogenesis via SIRT-1/PGC-1a network in skeletal muscle. Mohamed JS1, Hajira A, Pardo PS, Boriek AM. Protoplasma. 2015 Nov 16. [Epub ahead of print] Alleviation of selenium toxicity in Brassica juncea L.: salicylic acid-mediated modulation in toxicity indicators, stress modulators, and sulfur-related gene transcripts. Gupta S1, Gupta M2. Biomark Cancer. 2012 Dec 10;4:19-34. doi: 10.4137/BIC.S10502. eCollection 2012. Potential biomarkers in the sera of breast cancer patients from bahawalpur, pakistan. Nasim FU1, Ejaz S, Ashraf M, Asif AR, Oellerich M, Ahmad G, Malik GA, Attiq-Ur-Rehman. Int J Proteomics. 2015;2015:659241. doi: 10.1155/2015/659241. Epub 2015 Jan 21. Comparative proteomic study reveals the molecular aspects of delayed ocular symptoms induced by sulfur mustard. Pashandi Z1, Saraygord-Afshari N1, Naderi-Manesh H1, Naderi M2. Physiological response, cell wall components, and gene expression of switchgrass under short-term drought stress and recovery Y Jiang, Y Yao, Y Wang - Crop Science, 2012 - dl.sciencesocieties.org The unfolded protein response signals through high-order assembly of Ire1 AV Korennykh, PF Egea, AA Korostelev, J Finer-Moore… - Nature, 2008 - nature.com Proteoglycans of uterine fibroids and keloid scars: similarity in their proteoglycan composition AC David, M Sam, MB Nichole, WH William… - Biochemical …, 2012 - biochemj.org Innate Immune Messenger 2-5A Tethers Human RNase L into Active High-Order Complexes Y Han, G Whitney, J Donovan, A Korennykh - Cell reports, 2012 - Elsevier Targeted delivery of Epirubicin to cancer cells by PEGylated A10 aptamer SM Taghdisi, NM Danesh… - Journal of drug …, 2013 - informahealthcare.com Protection of flavonoids against hypochlorite-induced protein modifications J Siwak, A Lewinska, M Wnuk, G Bartosz - Food Chemistry, 2013 - Elsevier AUDocker LE: A GUI for virtual screening with AUTODOCK Vina G Sandeep, KP Nagasree, M Hanisha… - BMC research …, 2011 - biomedcentral.com [http://padel.nus.edu.sg/software/ EGCG protects endothelial cells against PCB 126-induced inflammation through inhibition of AhR and induction of Nrf2-regulated genes SG Han, SS Han, M Toborek, B Hennig - Toxicology and applied …, 2012 - Elsevier Bicalutamide-induced hypoxia potentiates RUNX2-mediated Bcl-2 expression resulting in apoptosis resistance G Browne, H Nesbitt, L Ming, GS Stein, JB Lian… - British journal of …, 2012 - nature.com An expression system for the efficient incorporation of an expanded set of tryptophan analogues DM Petrovic, K Leenhouts, ML van Roosmalen, J Broos - Amino acids, 2013 - Springer Structural basis of the unfolded protein response A Korennykh, P Walter - Annual review of cell and …, 2012 - annualreviews.org Self-aliquoting microarray plates for rapid and accurate quantitative MALDI-MS M Pabst, SR Fagerer, R Köhling, SK Küster… - Analytical …, 2013 - ACS Publications Differential expression of heat shock proteins and heat stress transcription factor genes in rice exposed to different levels of heat stress G Chandel, M Dubey, R Meena - Journal of Plant Biochemistry and …, 2012 - Springer Wnt/ß-catenin signaling and adipogenic genes are associated with intramuscular fat content in the longissimus dorsi muscle of Korean cattle JY Jeong, JS Kim, TH Nguyen, HJ Lee… - Animal genetics, 2013 - Wiley Online Library Nuclear Shape Changes Are Induced by Knockdown of the SWI/SNF ATPase BRG1 and Are Independent of Cytoskeletal Connections KM Imbalzano, N Cohet, Q Wu, JM Underwood… - PloS one, 2013 - dx.plos.org Preparation of pH-sensitive CaP nanoparticles coated with a phosphate-based block copolymer for efficient gene delivery S Jang, S Lee, H Kim, J Ham, JH Seo, Y Mok, M Noh… - Polymer, 2012 - Elsevier Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine D Renciuk, O Blacque, M Vorlickova… - Nucleic acids …, 2013 - Oxford Univ Press Mutation of the CgPDR16 gene attenuates azole tolerance and biofilm production in pathogenic Candida glabrata H Culakova, V Dzugasova, J Perzelova, Y Gbelska… - Yeast, 2013 - Wiley Online Library Association between low SIRT1 expression in visceral and subcutaneous adipose tissues and metabolic abnormalities in women with obesity and type 2 diabetes YS Song, SK Lee, YJ Jang, HS Park, JH Kim… - Diabetes research and …, 2013 - Elsevier Interleukin (IL)-32ß-mediated CCAAT/enhancer-binding protein a (C/EBPa) phosphorylation by protein kinase Cd (PKCd) abrogates the inhibitory effect of C/EBPa on … JW Kang, YS Park, MS Kim, DH Lee, Y Bak… - Journal of Biological …, 2013 - ASBMB Antioxidant efficacy and adhesion rescue by a recombinant mussel foot protein-6 SCT Nicklisch, NR Martinez Rodriguez… - Biotechnology …, 2013 - Wiley Online Library PAPP-A in Indian Water Buffalo (Bubalus bubalis) Ovary: Phylogeny, Expression, Hormonal Regulation, and Sequence Characterization V Nayan, A Bhardwaj, D Singh - Agricultural Research - Springer Structural and functional basis for RNA cleavage by Ire1 AV Korennykh, AA Korostelev, PF Egea… - BMC …, 2011 - biomedcentral.com Excess of O-linked N-acetylglucosamine modifies human pluripotent stem cell differentiation JJP Maury, KKK Chan, L Zheng, M Bardor… - Stem Cell Research, 2013 - Elsevier MiR-181 mediates cell differentiation by interrupting the Lin28 and let-7 feedback circuit X Li, J Zhang, L Gao, S McClellan, MA Finan… - Cell Death & …, 2011 - nature.com Vascular Ehlers-Danlos syndrome mutations in type III collagen differently stall the triple helical folding K Mizuno, S Boudko, J Engel, HP Bachinger - Journal of Biological …, 2013 - ASBMB Cofactor-mediated conformational control in the bifunctional kinase/RNase Ire1 AV Korennykh, PF Egea, AA Korostelev… - BMC …, 2011 - biomedcentral.com In Vitro Assessment of the Inflammatory Breast Cancer Cell Line SUM 149: Discovery of 2 Single Nucleotide Polymorphisms in the RNase L Gene BT Nokes, HE Cunliffe, B LaFleur, DW Mount… - Journal of …, 2013 - ncbi.nlm.nih.gov Unfolded protein response in Gaucher disease: from human to Drosophila G Maor, S Rencus-Lazar, M Filocamo, H Steller… - Orphanet journal of rare …, 2013 - ojrd.com A novel in-frame deletion affecting the BAR domain of OPHN1 in a family with intellectual disability and hippocampal alterations CB Santos-Rebouças, S Belet, LG de Almeida… - European Journal of …, 2013 - nature.com Structural basis for cytosolic double-stranded RNA surveillance by human oligoadenylate synthetase 1 J Donovan, M Dufner… - Proceedings of the …, 2013 - National Acad Sciences Prediction of protein binding sites and hot spots J Fernández-Recio - Wiley Interdisciplinary Reviews: …, 2011 - Wiley Online Library Novel “Breath Figure”-Based Synthetic PLGA Matrices for In Vitro Modeling of Mammary Morphogenesis and Assessing Chemotherapeutic Response T Ponnusamy, G Chakravarty… - Advanced Healthcare …, 2013 - Wiley Online Library Automatic analysis of 2D polyacrylamide gels in the diagnosis of DNA polymorphisms R Koprowski, Z Wróbel… - Biomedical …, 2013 - biomedical-engineering-online.com Role of Gadd45a in Wip1-dependent regulation of intestinal tumorigenesis ON Demidov, Y Zhu, C Kek, AR Goloudina… - Cell Death & …, 2012 - nature.com The TGF-ß-Smad3 pathway inhibits CD28-dependent cell growth and proliferation of CD4 T cells JS Delisle, M Giroux, G Boucher, JR Landry… - Genes and …, 2013 - nature.com Brittle Culm1, a COBRA-Like Protein, Functions in Cellulose Assembly through Binding Cellulose Microfibrils L Liu, K Shang-Guan, B Zhang, X Liu, M Yan, L Zhang… - PLoS genetics, 2013 - dx.plos.org Methods and Compositions for Modulating IRE1, SRC, and ABL Activity P Walter, A Korennykh, KM Shokat… - US Patent App. 13/ …, 2009 - Google Patents Page 1. US 20110319436A1 (19) United States (12) Patent Application Publication MicroRNA regulation by the DNA and RNA binding proteins EWS and FUS AMGC Fernandes - 2012 - repositorio.ul.pt Phage pierces the host cell membrane with the iron-loaded spike C Browning, MM Shneider, VD Bowman, D Schwarzer… - Structure, 2012 - Elsevier G-quadruplex DNA cleavage preference and identification of a perylene diimide G-quadruplex photocleavage agent using a rapid fluorescent assay M Schoonover, SM Kerwin - Bioorganic & medicinal chemistry, 2012 - Elsevier Small-molecule ligand docking into comparative models with Rosetta SA Combs, SL DeLuca, SH DeLuca, GH Lemmon… - Nature protocols, 2013 - nature.com Methods of inhibiting Ire1 A Korennykh, P Walter, H Li, A Dar… - US Patent …, 2012 - freepatentsonline.com Three dimensional projection environment for molecular design and surgical simulation E Wickstrom - 2011 - DTIC Document Characterization of cryptic components of the ancestral vertebrate genome N Feiner - 2013 - d-nb.info
